Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs4945001 chr11:71213465 A/G 1.94E-5 257 8.62 25.7 33.48 KM Plot
SARC rs4963932 chr12:26061683 T/C 4.13E-6 256 32.88 31.93 17.93 KM Plot
SARC rs4963933 chr12:26062254 G/T 7.24E-5 258 33.2 31.25 16.17 KM Plot
SARC rs4963935 chr12:26062536 G/A 1.73E-5 258 33.55 30.93 16.17 KM Plot
SARC rs4968228 chr17:45497548 T/C 9.98E-5 257 19.97 34 32.4 KM Plot
SARC rs4968257 chr17:45430534 A/G 2.72E-5 253 19.97 34 31.97 KM Plot
SARC rs4968318 chr17:45451894 G/A 3.29E-5 251 19.83 33.6 31.97 KM Plot
SARC rs4979170 chr9:115626918 C/G 1.15E-6 258 31.97 32.88 10.6 KM Plot
SARC rs4979172 chr9:115627268 T/C 1.24E-6 257 10.6 33.17 31.97 KM Plot
SARC rs4979173 chr9:115627699 A/C 1.24E-6 257 10.6 33.47 31.77 KM Plot
SARC rs4981099 chr14:31909245 A/G 1.91E-5 258 6.67 46.67 30.85 KM Plot
SARC rs543433 chr1:182483702 T/C 1.67E-7 257 6.72 36.27 31.1 KM Plot
SARC rs55787557 chr4:87950825 A/G 1.54E-5 256 30.75 36.4 19.8 KM Plot
SARC rs55959738 chr6:133215578 G/T 3.77E-6 252 32.13 28.63 14.95 KM Plot
SARC rs55994846 chr3:42699716 G/A 2.36E-5 251 32.3 32.07 13.08 KM Plot